00:00 - The Gardens
00:50 - Achievement Open Sesame
03:56 - Achievement The Gardens

04:05 - The Maquette
06:07 - Achievement Size Manipulator
06:39 - Achievement Precise Placement
08:09 - Achievement Breakout
16:17 - Achievement The Maquette

16:28 - The Gateways
22:40 - Achievement Crew Creatures
28:50 - Achievement The Gateways

28:59 - The Wedge
43:10 - Achievement The Wedge

43:20 - The Escape
48:12 - Achievement The Escape

48:21 - The Spiral
49:41 - Achievement Into the Darkness
55:36 - Achievement The Spiral

55:47 - The Exchange
58:13 - Achievement Run, Move, Run!
1:04:25 - After credits you will receive Achievement The Exchange + Achievement The Conclusion
To get achievements related to the time of passing levels - do the same, but do not read the text and skip all cutscenes.